Psychiatric genetics: CNVs are revealing the neuroscience of schizophrenia

Long stretches of DNA, from 1000 to several million base pairs, can be deleted or duplicated within a chromosome. These changes are known as copy number variants (CNVs). It is now recognised that eight CNVs are associated with schizophrenia. For a person carrying a CNV, their risk of developing schizophrenia is increased by 3-58 times compared to the general population. It is also known that approximately 2.5-5% of people suffering from schizophrenia will carry at least one of these CNVs.

A new paper by Danish researchers serves as an excellent introduction to this rapidly developing and fundamental topic. The authors detail the characteristics of each of the eight CNVs.

The effect of CNVs: Neurexin

The majority of the CNVs harbor multiple genes. The exception is deletion of a stretch of DNA which harbors a single gene coding for a protein called neurexin (NRXN)1.

The molecular biology of glutamate synapses.

Synapses are held together by cell adhesion molecules, one of which is neurexin (NRXN1).
Deletion in the gene for neurexin is a risk factor for schizophrenia and autism.

Neurexin is a component which holds the two sides of a synapse together. When people talk about connectivity in the nervous system, they are talking about components like neurexin. Healthy information processing in the brain depends on healthy stable connections between neurons.

The effect of CNVs: The other seven

Researchers are beginning to understand how the the seven other CNVs might operate to confer risk for schizophrenia, and indeed many other psychiatric syndromes. A property known as pleitropy means that a genetic change actually confers risk for a range of disorders. The CNVs associated with schizophrenia are also risk factors for autism, ADHD, epilepsy and intellectual disability. Indeed, all eight schizophrenia CNVs confer risk for autism spectrum disorders (Table 1).

Copy number variants (CNVs) which confer risk for schizophrenia and other neuropsychiatric syndromes

Copy number variants (CNVs) which confer risk for schizophrenia and other neuropsychiatric syndromes.

Using animal models, researchers can decipher how the CNVs alter brain and behviour since DNA stretches are conserved across mammalian species. Animal models of five of the eight schizophrenia CNVs are now available. Those CNVs have been shown to cause deficits in cognition, social behavior, information processing and synaptic plasticity.

Further developments in this area are bound to reveal much more detail about how altered neuronal dynamics give rise to schizophrenia and other major psychiatric syndromes.

Psychiatric genetics: everything you need to know.

Psychiatric geneticsPsychiatric genetics can be daunting for the non-expert. But it is so important for all mental health researchers and clinicians to have some understanding of where this field is at. Unlike much of the rest of psychiatric research and theory, modern genetics represents a firm foundation of valid and reliable knowledge. That knowledge is slowly unfurling how we think about psychiatric disorders such as ADHD, autism, depression, OCD, substance abuse, schizophrenia and bipolar.

A 2018 paper by Kendler and colleagues is an ideal overview, a straightforward, highly readable account of where things stand in psychiatric genetics, put in a historical context.

It has long been known that psychiatric illness runs in families. The heritability of psychiatric disorders (i.e. the degree of variance in a trait in a population which can be explained by genetics alone; a figure between 0 and 1) ranges from 0.3-0.4 for PTSD and depression, up to 0.7-0.8 for ADHD, autism, schizophrenia and bipolar. (Figure 1. Orange diagonal).

Psychiatric genetics

For the more genetic disorders (ADHD etc.) susceptibility very rarely comes down to one gene. Far more commonly, hundreds of individual genes are involved. Each gene, on its own, carries a tiny, almost negligible effect, at least in clinical if not statistical terms. But when a collection of risk genes is inherited, the chance of developing a psychiatric disorder starts to increase. For experts in psychiatric genetics, this is known as the polygenic risk score (PRS) the summed value of all the individual risk genes. The PRS is an important measure in modern psychiatric genetics.

Another important key-word is pleiotropy. This is when the same gene is involved in more than one psychiatric disorder. Pleiotropy has been recognized in psychiatry for some years. For example, a gene coding for a Ca2+ channel found on neurons, has long been known to constitute risk for a range of psychiatric disorders such as schizophrenia, bipolar, autism and major depression. Such knowledge is increasingly challenging the long-held view that there are discrete, neatly demarcated psychiatric disorders, as is found in the DSM and ICD classification systems.

Genetics researchers are now turning their attention to how a collection of genetic variants that increase the chances for one disorder (the polygenic risk score, PRS) may also increase the risk for other psychiatric disorders. This is pleiotropy at a higher level. The early findings again point to crossover between disorders. Kendler and colleagues elegantly illustrate the headline findings (Figure 1). The light blue squares show the genetic correlation between disorders using the methods of modern molecular genetics. The light orange squares show the genetic correlation between disorders using the more historical methods of family and twin studies.

For the present the main research effort will be to gather and pool more whole genome data from individual patients (and controls). Sample sizes of >100,000 will find more and more gene variants which confer risk for psychiatric disorders. Groups such as the multinational psychiatric genomics consortium (PGC) co-ordinate this task. Data-sets and computing resources are freely available to any researcher. Whether the traditional diagnostic systems collapse completely or remain in a different form cannot be know at present, but with modern molecular genetics, psychiatry is at last on a firm empirical and theoretical ground.

The Treatment of Alcohol Dependence: the utility of genetic testing.

DNA double helixOne goal in modern medicine is to use genetics to determine the best treatment strategy for an individual patient. A simple, cheap genetic test which predicts response to a particular treatment has clear utility for patients.

To date, psychiatry has lagged behind general medicine, no doubt due to the complexity of CNS tissue and the sheer number of components involved in CNS processing, but the picture is changing. One particular area of interest is the treatment of alcohol dependence.

The pharmacogenomics of topiramate

The drug topiramate started off as an anticonvulsant, but was also been found to be effective in reducing alcohol consumption in heavy drinkers. An American study has advanced our knowledge. Natural variation in the DNA coding for a type of glutamate receptor called the kainite receptor was shown to determine if problem drinkers responded to topiramate treatment.

In those carrying the CC variant at rs2832407, topiramate (200mg/d) markedly reduced the number of heavy drinking days compared to placebo (Fig. 1). Heavy drinking decreased from 5 days per week to approximately 1 day per week in CC subjects treated with topiramate.

topiramate v placebo for heavy drinking by genotype

In a 12 week study, heavy drinkers with the CC genotype at rs2832407 in the kainite receptor showed significant reductions in heavy drinking when treated with topiramate.

 

Definite study

A larger study is now underway, hoping to confirm the initial genetic findings. If the result is replicated, genetic testing may translate to routine clinical practice for heavy drinkers considering topiramate treatment.

This would represent a significant advance in the management of alcohol disorders.

Treatment Resistant Depression: future prospects

Many patients go through years and years of depression which stubbornly resists treatment. Therapy, SSRIs, even ECT, can all fail to provide any shift.

But a recent paper by Oxford psychiatrist Phil Cowen brings some light. In a readable and straightforward account, Cowen weighs-up the various options that are available, when first and second line antidepressant treatments are ineffective.

Depressed patients, GPs and psychiatrists will find the text very useful in selecting options – and in keeping hope alive. Topics covered include various combination and augmentation strategies and their statistical likelihood of success. Also, an expert appraisal of several new approaches, which are showing promise – including ketamine and psilocybin. Recent findings with pramipexole, a drug already used in neurology, are especially encouraging.

The full text published in the journal Psychological Medicine is available here.

 

Psychiatric illness ‘explained’: Disorders of CNS Connectivity

The power of the nervous system:

network-of-cortical-neurons

The astonishing power of the nervous system does not reside in a single neuron. (That said, an advanced supercomputer is required for the task of modelling the processing power of even a single neuron).

Nervous tissue is immensely powerful because of the rich connectivity between neurons. A 1mm voxel of cerebral cortex (a standard fMRI unit), contains ~300 million synaptic connections and ~50 thousand neurons [ref].  Scaled up to the whole human brain, there are estimated to be several hundred trillion synaptic connections within a total pool of ~100 billion neurons. Neuronal networks are the foundation of, perception, movement, thinking, memory and the personality.

Network learning

A crucial property of neuronal networks is that they learn from experience. Experience may stem from the external world (sensation) or the inner world. Learning is achieved by adjusting the strength of the connections between neurons. New connections can form, and weak connections wither away – essentially a process of re-wiring. Taking up a musical instrument or a new language, for example, constitutes a major re-wiring exercise, although higher, more mysterious faculties – such as selfhood, agency and individual identity – are already wired-up in infancy, and remain a foundation throughout life, except if threatened by the most severe psychiatric disorders.

Alzheimer’s disease is the prototypical example of a network illness. Progressive       shrivelling of the network mirrors the decline of the faculties, from initial problems with memory right up to the disintegration of selfhood.

Network health

Network health is vital for mental health. The stabilisation of essential connections, the formation of new connections and the controlled elimination of redundant connections involves many components.

  • There are components which span the gap between nerve terminals and dendritic spines to ensure that connections remain tightly bound [link].
  • There are signalling pathways which control the dynamic, flexible actin scaffold which give terminals and spines their anatomical structure.
  • There is, ready-to-hand, protein-synthesis machinery for making additional spines as learning proceeds.
  • Finally, and most recently explored, there are mechanisms for ‘clearing up’ the debris when connections are no longer required. Such components (microglia, complement proteins) are much more familiar in their role as immune cells and immune signals, but their role extends beyond inflammation. Microglia and complement are now recognised as key components in the wiring of the brain as it learns and develops.

Major psychiatric illness

dendritic spine

Where those components involved in the function and structure of synaptic connections are defective, psychiatric illness can result. Mutations in the components which bind the nerve terminal and dendritic spine are a cause of autism. The cause of many learning disability cases, hitherto unknown, are mutations in proteins which control the actin scaffold. The psychiatric manifestations of Fragile X syndrome (intellectual deficits / autistic features / hyperactivity) result from abnormal protein synthesis in dendritic spines and subsequent abnormal local wiring.

dendritic-spine

Microglia & complement proteins

pink-eatme-cake-topperThe latest components to receive attention, as pertains to psychiatric illness are the microglia and their signalling pathways, specifically complement proteins.

Complement proteins function as a tag, essentially an ‘eat-me’ signal, on synapses destined for elimination. The tag is recognised by the phagocytic microglia which engulf and clear the redundant synaptic elements [link].

Although the role of immune components in psychiatric illness has become a hot topic, many researchers are still accustomed to regard microglia and complement in the context of inflammation rather than CNS re-wiring. Both major depression and schizophrenia, have been linked with abnormal immune components, but neither disorder is inflammatory in the same sense as encephalitis or meningitis. The main histological finding in schizophrenia is decreased connectivity between neurons, not inflamed nervous tissue. Similarly, an anatomical correlate of depression is impoverished connectivity in the hippocampus, not inflammation.

A major development in Alzheimer’s research has been the recognition of up-regulated complement proteins and microglial phagocytosis commensurate with the loss of neuronal connections. The crucial observation is that such changes occur prior to amyloid deposition and tangle formation [link]. Alzheimer’s appears to be a disorder of runaway synaptic loss. Drug discovery efforts are aimed at blocking complement protein receptors to protect synapses [link].

Schizophrenia has been associated with changes in the genes coding for a specific complement protein (C4A). Knockout of the C4A gene in an animal model causes a marked alteration in the pruning of synaptic connections in later life [link]. Schizophrenia, albeit to a far less extent than Alzheimer’s, is regarded as a disorder of impoverished connectivity, (whereas Autism is associated with increased dendritic spines and increased connectivity) [link].

Hold on –  what about the ‘dominant’ wet-ware hypotheses?

hoovers

An older generation of psychiatric researchers may ask where dopamine [link]] and perhaps glutamate [link] fit into a model of psychiatric illness in which abnormal connectivity between neurons appears to carry robust explanatory power. Earlier models posited that an excess or deficiency of neurotransmitter or receptors lay at the root of major depression and schizophrenia. Such models stemmed from the relatively primitive knowledge of the synapse available at the time (circa 1965-1975). Then, the hot topics in neuroscience were; the nature of neurotransmitter release (Sir Bernard Katz, UCL) and the ‘visualisation’ of receptors (Solomon Snyder, John Hopkins).

The answer (to the question of how glutamate and dopamine are accommodated) is fairly straightforward: Glutamate (finally admitted to the neurotransmitter club circa 1983-87) is the fast neurotransmitter between nerve terminals and dendritic spines, throughout nervous tissue. Dopamine determines the strength of the connection between the glutamate terminal and the dendritic spine within specific CNS structures. Dopamine functions as a teaching signal; adjusting connectivity and promoting learning in higher centres.

Frontier psychiatry

hippocampus

The obvious strategy of searching for molecules which can impact on connectivity is well underway.

That said, existing psychiatric treatments, such as antidepressants, lithium and dopamine antipsychotics have an impact upon connectivity to the extent that structural changes can already be detected, albeit in a population of patients rather than the individual, with routine MRI scans. Drugs impact upon plasticity: Drugs impact upon CNS structure.

A more basic question goes back to the very roots of modern psychiatry. The question is whether, for some, the neuronal networks are destined to be unwell from the outset (endogenous psychiatric illness), or if, for others, adverse experiences during development cause the network to wire-up pathologically (exogenous psychiatric illness). Then again, there is the third position, in which the choreography between the neuronal hardware and the external environment determines who will succumb to psychiatric syndromes. Whatever the proximal cause(s), endogenous or exogenous, major psychiatric illness appears to stem from abnormal connectivity within neuronal networks.